PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P05280_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 229aa    MW: 25837.6 Da    PI: 9.9237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P05280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-0865113354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +++  rE+ RRdr N++f eL ++l +    + ++ +Ka+iL  A++ +  L
  GSMUA_Achr4P05280_001  65 KSKACREKIRRDRQNKRFIELSSILDPG---RPPRADKASILGDATRVLMRL 113
                            57789**********************7...789***********9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.45E-651118No hitNo description
SuperFamilySSF474597.07E-1154128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.59262113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-862135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-665113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-768119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGTDPIEDFW IDGGGSDSEL QYALDGFRDM VPTVGVGKEE PYRDLRGLEQ NSSRKRARNE  60
PRASKSKACR EKIRRDRQNK RFIELSSILD PGRPPRADKA SILGDATRVL MRLRAEAQEL  120
KESNKKLHET IKDMKVEKNE LREEKMRLKA DKDRLEQQIK VLSVPPVGFL PHPIAFHPAA  180
APAAFVPQVQ ASADKTAPFS GFPGMAMWQW LPPAVMDTTQ DPKLWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395406.11e-168PREDICTED: transcription factor ILR3-like
SwissprotQ9FH374e-56ILR3_ARATH; Transcription factor ILR3
TrEMBLM0SL951e-168M0SL95_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P05280_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-51bHLH family protein